Index

_

__del__() (rdigraphs.datamanager.base_dm_neo4j.BaseDMneo4j method) (rdigraphs.datamanager.base_dm_sql.BaseDMsql method) __init__() (rdigraphs.community_plus.community_plus.CommunityPlus method) (rdigraphs.datamanager.base_dm_neo4j.BaseDMneo4j method) (rdigraphs.datamanager.base_dm_sql.BaseDMsql method) (rdigraphs.datamanager.callbacks.Disambiguator method) (rdigraphs.datamanager.cypher.DataLoadingStatement method) (rdigraphs.datamanager.datamanager.DataManager method) (rdigraphs.labtaskmanager.LabTaskManager method) (rdigraphs.menu_navigator.menu_navigator.MenuNavigator method) (rdigraphs.sgtaskmanager.SgTaskManager method) (rdigraphs.sim_graph.sim_graph.SimGraph method) (rdigraphs.supergraph.sedge.SEdge method) (rdigraphs.supergraph.supergraph.SuperGraph method)

__weakref__ (rdigraphs.community_plus.community_plus.CommunityPlus attribute) (rdigraphs.datamanager.base_dm_neo4j.BaseDMneo4j attribute) (rdigraphs.datamanager.base_dm_sql.BaseDMsql attribute) (rdigraphs.datamanager.callbacks.Disambiguator attribute) (rdigraphs.datamanager.cypher.Statement attribute) (rdigraphs.datamanager.datamanager.DataManager attribute) (rdigraphs.menu_navigator.menu_navigator.MenuNavigator attribute) (rdigraphs.sgtaskmanager.SgTaskManager attribute) (rdigraphs.supergraph.supergraph.SuperGraph attribute)

A

activate_all() (rdigraphs.supergraph.supergraph.SuperGraph method) activate_sedge() (rdigraphs.supergraph.supergraph.SuperGraph method) activate_snode() (rdigraphs.supergraph.supergraph.SuperGraph method) add_single_edge() (rdigraphs.supergraph.sedge.SEdge method) add_single_node() (rdigraphs.supergraph.sedge.SEdge method) add_snode_attributes() (rdigraphs.supergraph.supergraph.SuperGraph method) addSuperEdge() (rdigraphs.supergraph.supergraph.SuperGraph method) addSuperNode() (rdigraphs.supergraph.supergraph.SuperGraph method) addTableColumn() (rdigraphs.datamanager.base_dm_sql.BaseDMsql method)

analyze_radius() (rdigraphs.labtaskmanager.LabTaskManager method) analyze_sampling() (rdigraphs.labtaskmanager.LabTaskManager method) assemble() (rdigraphs.datamanager.cypher.LoadAttributesTable method) (rdigraphs.datamanager.cypher.LoadJoinTable method) (rdigraphs.datamanager.cypher.LoadTable method) (rdigraphs.datamanager.cypher.MakeRelationship method) (rdigraphs.datamanager.cypher.UpdateTable method) assert_uniqueness_clause() (in module rdigraphs.datamanager.cypher) AuthorsDisambiguator (class in rdigraphs.datamanager.callbacks)

B

BaseDMneo4j (class in rdigraphs.datamanager.base_dm_neo4j)

BaseDMsql (class in rdigraphs.datamanager.base_dm_sql)

C

clean_up_metagraph() (rdigraphs.supergraph.supergraph.SuperGraph method) clear() (rdigraphs.menu_navigator.menu_navigator.MenuNavigator method) cluster_equivalent_nodes() (rdigraphs.sim_graph.sim_graph.SimGraph method) community_metric() (rdigraphs.community_plus.community_plus.CommunityPlus method) (rdigraphs.sgtaskmanager.SgTaskManager method) CommunityPlus (class in rdigraphs.community_plus.community_plus) compare_communities() (rdigraphs.community_plus.community_plus.CommunityPlus method) (rdigraphs.sgtaskmanager.SgTaskManager method) compute_citation_centralities() (rdigraphs.labtaskmanager.LabTaskManager method) compute_id_graph() (rdigraphs.sim_graph.sim_graph.SimGraph method) compute_ppr() (rdigraphs.supergraph.supergraph.SuperGraph method)

computeSimBiGraph() (rdigraphs.supergraph.sedge.SEdge method) (rdigraphs.supergraph.supergraph.SuperGraph method) computeSimGraph() (rdigraphs.supergraph.supergraph.SuperGraph method) computeXeq() (rdigraphs.sim_graph.sim_graph.SimGraph method) connectivity_graph() (rdigraphs.sim_graph.sim_graph.SimGraph method) cosine_sim() (rdigraphs.supergraph.supergraph.SuperGraph method) create() (rdigraphs.sgtaskmanager.SgTaskManager method) create_constraint_clause() (in module rdigraphs.datamanager.cypher) create_indexes() (in module rdigraphs.datamanager.cypher) create_or_merge_node() (in module rdigraphs.datamanager.cypher) create_or_merge_relationship() (in module rdigraphs.datamanager.cypher) create_unique_constraint() (in module rdigraphs.datamanager.cypher)

D

DataLoadingStatement (class in rdigraphs.datamanager.cypher) DataManager (class in rdigraphs.datamanager.datamanager) deactivate() (rdigraphs.supergraph.supergraph.SuperGraph method) deactivate_sedge() (rdigraphs.supergraph.supergraph.SuperGraph method) deactivate_snode() (rdigraphs.supergraph.supergraph.SuperGraph method) deleteDBtables() (rdigraphs.datamanager.base_dm_sql.BaseDMsql method) detect_communities() (rdigraphs.community_plus.community_plus.CommunityPlus method) detectCommunities() (rdigraphs.sgtaskmanager.SgTaskManager method) (rdigraphs.supergraph.supergraph.SuperGraph method) dic_to_properties() (in module rdigraphs.datamanager.cypher) disambiguate_node() (rdigraphs.sgtaskmanager.SgTaskManager method) (rdigraphs.supergraph.supergraph.SuperGraph method) Disambiguator (class in rdigraphs.datamanager.callbacks)

disconnect_nodes() (rdigraphs.supergraph.sedge.SEdge method) display_bigraph() (rdigraphs.sgtaskmanager.SgTaskManager method) div2sim() (rdigraphs.sim_graph.sim_graph.SimGraph method) DMneo4j (class in rdigraphs.datamanager.datamanager) DMsql (class in rdigraphs.datamanager.datamanager) drop_node_property() (rdigraphs.datamanager.base_dm_neo4j.BaseDMneo4j method) drop_null_valued_keys() (in module rdigraphs.datamanager.cypher) drop_relationship() (rdigraphs.datamanager.base_dm_neo4j.BaseDMneo4j method) drop_sedge() (rdigraphs.supergraph.supergraph.SuperGraph method) drop_single_node() (rdigraphs.supergraph.sedge.SEdge method) drop_snode() (rdigraphs.supergraph.supergraph.SuperGraph method) dropTableColumn() (rdigraphs.datamanager.base_dm_sql.BaseDMsql method) duplicate_snode() (rdigraphs.supergraph.supergraph.SuperGraph method)

E

equivalence_graph() (rdigraphs.sgtaskmanager.SgTaskManager method) export_2_halo() (rdigraphs.supergraph.supergraph.SuperGraph method) export_bigraph() (rdigraphs.sgtaskmanager.SgTaskManager method)

export_graph() (rdigraphs.datamanager.base_dm_neo4j.BaseDMneo4j method) (rdigraphs.sgtaskmanager.SgTaskManager method) export_table_to_csv() (rdigraphs.datamanager.base_dm_sql.BaseDMsql method) exportTable() (rdigraphs.datamanager.base_dm_sql.BaseDMsql method)

F

filter_edges_from_sedge() (rdigraphs.supergraph.supergraph.SuperGraph method) filter_edges_from_snode() (rdigraphs.supergraph.supergraph.SuperGraph method)

flatten_dic() (rdigraphs.datamanager.cypher.DataLoadingStatement method) front_page() (rdigraphs.menu_navigator.menu_navigator.MenuNavigator method)

G

generate_minigraph() (rdigraphs.sgtaskmanager.SgTaskManager method) get_attributes() (rdigraphs.sgtaskmanager.SgTaskManager method) (rdigraphs.supergraph.supergraph.SuperGraph method) get_communities() (rdigraphs.sgtaskmanager.SgTaskManager method) get_db_structure() (rdigraphs.datamanager.base_dm_neo4j.BaseDMneo4j method) get_equivalent_classes() (rdigraphs.labtaskmanager.LabTaskManager method) get_graphs_with_features() (rdigraphs.sgtaskmanager.SgTaskManager method) get_keyword_descriptions() (rdigraphs.labtaskmanager.LabTaskManager method) get_local_features() (rdigraphs.sgtaskmanager.SgTaskManager method) get_metadata() (in module rdigraphs.datamanager.cypher) (rdigraphs.supergraph.supergraph.SuperGraph method) get_names_of_dataset_tables() (rdigraphs.sgtaskmanager.SgTaskManager method) get_names_of_SQL_dbs() (rdigraphs.sgtaskmanager.SgTaskManager method) get_Neo4J_sedges() (rdigraphs.sgtaskmanager.SgTaskManager method) get_Neo4J_snodes() (rdigraphs.sgtaskmanager.SgTaskManager method) get_sedges() (rdigraphs.supergraph.supergraph.SuperGraph method)

get_snodes() (rdigraphs.supergraph.supergraph.SuperGraph method) get_source_atts() (rdigraphs.sgtaskmanager.SgTaskManager method) get_source_info() (rdigraphs.labtaskmanager.LabTaskManager method) get_source_nodes() (rdigraphs.supergraph.sedge.SEdge method) get_sql_table_names() (rdigraphs.sgtaskmanager.SgTaskManager method) get_table_atts() (rdigraphs.sgtaskmanager.SgTaskManager method) get_target_atts() (rdigraphs.sgtaskmanager.SgTaskManager method) get_target_nodes() (rdigraphs.supergraph.sedge.SEdge method) get_terminals() (rdigraphs.supergraph.sedge.SEdge method) (rdigraphs.supergraph.supergraph.SuperGraph method) getColumnNames() (rdigraphs.datamanager.base_dm_sql.BaseDMsql method) getGDBstruct() (rdigraphs.sgtaskmanager.SgTaskManager method) getTableInfo() (rdigraphs.datamanager.base_dm_sql.BaseDMsql method) getTableNames() (rdigraphs.datamanager.base_dm_sql.BaseDMsql method) graph_layout() (rdigraphs.sgtaskmanager.SgTaskManager method) (rdigraphs.supergraph.supergraph.SuperGraph method)

H

handle_duplicates() (rdigraphs.datamanager.callbacks.Disambiguator static method)

he_affinity() (rdigraphs.sim_graph.sim_graph.SimGraph method)

I

import_agents() (rdigraphs.sgtaskmanager.SgTaskManager method) import_and_infer_sim_graph() (rdigraphs.sgtaskmanager.SgTaskManager method) import_co_citations_graph() (rdigraphs.sgtaskmanager.SgTaskManager method) import_graph_data_from_tables() (rdigraphs.datamanager.datamanager.DataManager method) import_node_atts() (rdigraphs.sgtaskmanager.SgTaskManager method) import_nodes_and_model() (rdigraphs.sgtaskmanager.SgTaskManager method) import_SCOPUS_citations_graph() (rdigraphs.sgtaskmanager.SgTaskManager method) import_SCOPUS_citations_subgraph() (rdigraphs.sgtaskmanager.SgTaskManager method) import_snode_from_table() (rdigraphs.sgtaskmanager.SgTaskManager method) infer_eq_simgraph() (rdigraphs.sgtaskmanager.SgTaskManager method) infer_ppr_graph() (rdigraphs.sgtaskmanager.SgTaskManager method)

infer_sim_bigraph() (rdigraphs.sgtaskmanager.SgTaskManager method) infer_sim_graph() (rdigraphs.sgtaskmanager.SgTaskManager method) inferBGfromA() (rdigraphs.sgtaskmanager.SgTaskManager method) inferSimBG() (rdigraphs.sgtaskmanager.SgTaskManager method) inferTransit() (rdigraphs.sgtaskmanager.SgTaskManager method) initialize() (in module rdigraphs.datamanager.callbacks) insertInTable() (rdigraphs.datamanager.base_dm_sql.BaseDMsql method) is_active_sedge() (rdigraphs.supergraph.supergraph.SuperGraph method) is_active_snode() (rdigraphs.supergraph.supergraph.SuperGraph method) is_sedge() (rdigraphs.supergraph.supergraph.SuperGraph method) is_snode() (rdigraphs.supergraph.supergraph.SuperGraph method)

J

JS2_affinity() (rdigraphs.sim_graph.sim_graph.SimGraph method)

JSdist() (in module rdigraphs.sim_graph.sim_graph) JSdist_sp() (in module rdigraphs.sim_graph.sim_graph)

L

l1_affinity() (rdigraphs.sim_graph.sim_graph.SimGraph method) l2_affinity() (rdigraphs.sim_graph.sim_graph.SimGraph method) labels() (in module rdigraphs.datamanager.cypher) LabTaskManager (class in rdigraphs.labtaskmanager) largest_community_subgraph() (rdigraphs.sgtaskmanager.SgTaskManager method) load() (rdigraphs.sgtaskmanager.SgTaskManager method) load_clause() (rdigraphs.datamanager.cypher.DataLoadingStatement method)

load_SCOPUS_citations_all() (rdigraphs.datamanager.datamanager.DataManager method) load_SCOPUS_citations_with_atts() (rdigraphs.datamanager.datamanager.DataManager method) LoadAttributesTable (class in rdigraphs.datamanager.cypher) LoadJoinTable (class in rdigraphs.datamanager.cypher) LoadTable (class in rdigraphs.datamanager.cypher) local_graph_analysis() (rdigraphs.sgtaskmanager.SgTaskManager method) local_snode_analysis() (rdigraphs.supergraph.supergraph.SuperGraph method)

M

make_edges() (rdigraphs.datamanager.base_dm_neo4j.BaseDMneo4j method) make_relationship() (in module rdigraphs.datamanager.cypher) MakeRelationship (class in rdigraphs.datamanager.cypher) makeSuperNode() (rdigraphs.supergraph.supergraph.SuperGraph method) match_clause() (rdigraphs.datamanager.cypher.DataLoadingStatement method) match_label() (in module rdigraphs.datamanager.cypher) match_relationship() (in module rdigraphs.datamanager.cypher) MenuNavigator (class in rdigraphs.menu_navigator.menu_navigator) merge() (rdigraphs.datamanager.callbacks.Disambiguator method) merge_relationship_with_properties_clause() (in module rdigraphs.datamanager.cypher) module rdigraphs.community_plus.community_plus rdigraphs.datamanager.base_dm_neo4j rdigraphs.datamanager.base_dm_sql rdigraphs.datamanager.callbacks rdigraphs.datamanager.cypher rdigraphs.datamanager.datamanager rdigraphs.datamanager.util rdigraphs.labtaskmanager rdigraphs.menu_navigator.menu_navigator rdigraphs.sgtaskmanager rdigraphs.sim_graph.sim_graph rdigraphs.supergraph.dgview rdigraphs.supergraph.sedge rdigraphs.supergraph.supergraph

N

navigate() (rdigraphs.menu_navigator.menu_navigator.MenuNavigator method)

O

OrganizationsDisambiguator (class in rdigraphs.datamanager.callbacks)

P

patents_literature() (in module rdigraphs.datamanager.callbacks) patents_non_literature() (in module rdigraphs.datamanager.callbacks) patents_person() (in module rdigraphs.datamanager.callbacks) patstats_person() (rdigraphs.datamanager.callbacks.AuthorsDisambiguator method) patstats_person_application() (rdigraphs.datamanager.callbacks.AuthorsDisambiguator method) plot_cluster_analysis() (in module rdigraphs.supergraph.dgview) plotAverageTopic() (in module rdigraphs.supergraph.dgview) plotClusterWeights() (in module rdigraphs.supergraph.dgview) plotCXmatrix() (in module rdigraphs.supergraph.dgview) plotMainTopic() (in module rdigraphs.supergraph.dgview)

plotSortedFeatures() (in module rdigraphs.supergraph.dgview) printClusters() (in module rdigraphs.supergraph.dgview) printStats() (in module rdigraphs.supergraph.dgview) projects_organizations() (rdigraphs.datamanager.callbacks.OrganizationsDisambiguator method) projects_projects() (rdigraphs.datamanager.callbacks.OrganizationsDisambiguator method) projects_researcher_project() (rdigraphs.datamanager.callbacks.AuthorsDisambiguator method) projects_researchers() (in module rdigraphs.datamanager.callbacks) (rdigraphs.datamanager.callbacks.AuthorsDisambiguator method) properties_of_label() (rdigraphs.datamanager.base_dm_neo4j.BaseDMneo4j method) properties_of_relationship() (rdigraphs.datamanager.base_dm_neo4j.BaseDMneo4j method) publications_authorship() (in module rdigraphs.datamanager.callbacks)

Q

query_options() (rdigraphs.menu_navigator.menu_navigator.MenuNavigator method)

R

rankEdges() (in module rdigraphs.supergraph.dgview) rdigraphs.community_plus.community_plus module rdigraphs.datamanager.base_dm_neo4j module rdigraphs.datamanager.base_dm_sql module rdigraphs.datamanager.callbacks module rdigraphs.datamanager.cypher module rdigraphs.datamanager.datamanager module rdigraphs.datamanager.util module rdigraphs.labtaskmanager module rdigraphs.menu_navigator.menu_navigator module rdigraphs.sgtaskmanager module rdigraphs.sim_graph.sim_graph module rdigraphs.supergraph.dgview module

rdigraphs.supergraph.sedge module rdigraphs.supergraph.supergraph module read_edges() (rdigraphs.datamanager.base_dm_neo4j.BaseDMneo4j method) read_nodes() (rdigraphs.datamanager.base_dm_neo4j.BaseDMneo4j method) read_vocabulary() (rdigraphs.labtaskmanager.LabTaskManager method) readCoordsFromFile() (rdigraphs.datamanager.datamanager.DataManager method) readDBtable() (rdigraphs.datamanager.base_dm_sql.BaseDMsql method) relationship_types() (in module rdigraphs.datamanager.cypher) remove_isolated_nodes() (rdigraphs.sgtaskmanager.SgTaskManager method) (rdigraphs.supergraph.supergraph.SuperGraph method) remove_property() (in module rdigraphs.datamanager.cypher) remove_relationship() (in module rdigraphs.datamanager.cypher) remove_snode_attributes() (rdigraphs.sgtaskmanager.SgTaskManager method) (rdigraphs.supergraph.supergraph.SuperGraph method) replace() (rdigraphs.datamanager.callbacks.Disambiguator method) request_confirmation() (rdigraphs.menu_navigator.menu_navigator.MenuNavigator method) reset_database() (in module rdigraphs.datamanager.cypher) (rdigraphs.datamanager.base_dm_neo4j.BaseDMneo4j method) reset_Neo4J() (rdigraphs.sgtaskmanager.SgTaskManager method) reset_Neo4J_sedge() (rdigraphs.sgtaskmanager.SgTaskManager method) reset_Neo4J_snode() (rdigraphs.sgtaskmanager.SgTaskManager method) reset_sedge() (rdigraphs.sgtaskmanager.SgTaskManager method) reset_snode() (rdigraphs.sgtaskmanager.SgTaskManager method) resetGDBdata() (rdigraphs.sgtaskmanager.SgTaskManager method)

S

save_feature_matrix() (rdigraphs.supergraph.sedge.SEdge method) save_metadata() (rdigraphs.sgtaskmanager.SgTaskManager method) save_supergraph() (rdigraphs.supergraph.supergraph.SuperGraph method) scopus_authorship() (rdigraphs.datamanager.callbacks.AuthorsDisambiguator method) (rdigraphs.datamanager.callbacks.OrganizationsDisambiguator method) SEdge (class in rdigraphs.supergraph.sedge) set_edges() (rdigraphs.supergraph.sedge.SEdge method) set_logs() (rdigraphs.sgtaskmanager.SgTaskManager method) set_nodes() (rdigraphs.supergraph.sedge.SEdge method) setField() (rdigraphs.datamanager.base_dm_sql.BaseDMsql method) setup() (rdigraphs.sgtaskmanager.SgTaskManager method) SgTaskManager (class in rdigraphs.sgtaskmanager) show_all_citation_centralities() (rdigraphs.labtaskmanager.LabTaskManager method) show_equivalent_classes() (rdigraphs.labtaskmanager.LabTaskManager method) show_JS_bounds() (rdigraphs.sim_graph.sim_graph.SimGraph method) show_Neo4J() (rdigraphs.sgtaskmanager.SgTaskManager method) show_Neo4J_sedge() (rdigraphs.sgtaskmanager.SgTaskManager method) show_Neo4J_snode() (rdigraphs.sgtaskmanager.SgTaskManager method) show_sedge() (rdigraphs.sgtaskmanager.SgTaskManager method) show_snode() (rdigraphs.sgtaskmanager.SgTaskManager method)

show_SuperGraph() (rdigraphs.sgtaskmanager.SgTaskManager method) show_top_nodes() (rdigraphs.sgtaskmanager.SgTaskManager method) show_validation_results_e() (rdigraphs.labtaskmanager.LabTaskManager method) showGDBdata() (rdigraphs.sgtaskmanager.SgTaskManager method) showSDBdata() (rdigraphs.sgtaskmanager.SgTaskManager method) sim2div() (rdigraphs.sim_graph.sim_graph.SimGraph method) sim_graph() (rdigraphs.sim_graph.sim_graph.SimGraph method) SimGraph (class in rdigraphs.sim_graph.sim_graph) simple_http_server() (in module rdigraphs.datamanager.util) simTest() (rdigraphs.sim_graph.sim_graph.SimGraph method) snode_from_atts() (rdigraphs.supergraph.supergraph.SuperGraph method) snode_from_edges() (rdigraphs.supergraph.supergraph.SuperGraph method) snode_from_eqs() (rdigraphs.supergraph.supergraph.SuperGraph method) Statement (class in rdigraphs.datamanager.cypher) sub_snode() (rdigraphs.supergraph.supergraph.SuperGraph method) sub_snode_by_novalue() (rdigraphs.supergraph.supergraph.SuperGraph method) sub_snode_by_threshold() (rdigraphs.supergraph.supergraph.SuperGraph method) sub_snode_by_value() (rdigraphs.supergraph.supergraph.SuperGraph method) subsample_graph() (rdigraphs.sgtaskmanager.SgTaskManager method) SuperGraph (class in rdigraphs.supergraph.supergraph)

T

transduce() (rdigraphs.sgtaskmanager.SgTaskManager method) (rdigraphs.supergraph.supergraph.SuperGraph method)

transitive_graph() (rdigraphs.supergraph.supergraph.SuperGraph method)

U

update_folders() (rdigraphs.sgtaskmanager.SgTaskManager method) update_metadata() (rdigraphs.supergraph.sedge.SEdge method)

UpdateTable (class in rdigraphs.datamanager.cypher) upsert() (rdigraphs.datamanager.base_dm_sql.BaseDMsql method)

V

validate_all_models_cd() (rdigraphs.labtaskmanager.LabTaskManager method)

validate_topic_models() (rdigraphs.labtaskmanager.LabTaskManager method) visualize_bigraph() (rdigraphs.labtaskmanager.LabTaskManager method)

W

write_dataframe() (rdigraphs.datamanager.base_dm_neo4j.BaseDMneo4j method)